Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 KRT8P44-201ENST00000441609 1350 ntBASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 KRT126P-201ENST00000549467 1181 ntBASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 AC127383.1-201ENST00000444697 1800 ntBASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMA1Q9UHB6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AKAP8P1-201ENST00000434743 1349 ntBASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AC142381.1-201ENST00000426099 345 ntBASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 RPL13AP23-201ENST00000480739 586 ntBASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AC092865.6-201ENST00000642101 219 ntBASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 AL136982.4-201ENST00000437689 1740 ntBASIC17.5■□□□□ 0.39
LIMA1Q9UHB6 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AC091951.1-201ENST00000512854 2465 ntBASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms