Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.83■□□□□ 0.12
MKS1Q9NXB0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC148477.4-201ENST00000613430 1793 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC009947.1-201ENST00000444350 727 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC023141.13-201ENST00000604991 943 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC007064.4-201ENST00000637740 555 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC005089.1-201ENST00000619486 2241 ntBASIC15.82■□□□□ 0.12
MKS1Q9NXB0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
MKS1Q9NXB0 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC004987.2-201ENST00000395959 1148 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 CRYGEP-201ENST00000412192 528 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 RPS8P6-201ENST00000426177 609 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC098859.1-201ENST00000502915 1238 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC232323.1-201ENST00000540724 2099 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC024267.1-201ENST00000582320 895 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 REXO1L5P-201ENST00000622260 2098 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 AC148477.8-201ENST00000624298 468 ntBASIC15.81■□□□□ 0.12
MKS1Q9NXB0 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms