Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 AC022188.1-201ENST00000620960 1664 ntBASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC008741.2-201ENST00000612792 3115 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 MEP1AP4-201ENST00000423244 1087 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC023310.3-201ENST00000557027 670 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC100756.1-201ENST00000562736 682 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC138749.3-201ENST00000567691 622 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC116165.1-201ENST00000611806 668 ntBASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TM9SF3Q9HD45 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AL589987.1-201ENST00000453380 819 ntBASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms