Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 MIR7706-201ENST00000613747 67 ntBASIC12.07□□□□□ -0.48
LINC00477Q96M19 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 AL031008.1-201ENST00000619963 541 ntBASIC12.07□□□□□ -0.48
LINC00477Q96M19 AC020658.6-201ENST00000623564 1870 ntBASIC12.07□□□□□ -0.48
LINC00477Q96M19 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 AL596257.1-201ENST00000641463 2694 ntBASIC12.07□□□□□ -0.48
LINC00477Q96M19 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AC006058.4-201ENST00000624016 1670 ntBASIC12.06□□□□□ -0.48
LINC00477Q96M19 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CSF3-203ENST00000394148 622 ntTSL 3 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PRYP6-201ENST00000514804 343 ntBASIC12.06□□□□□ -0.48
LINC00477Q96M19 IGHV3-22-201ENST00000520721 359 ntBASIC12.06□□□□□ -0.48
LINC00477Q96M19 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CD63-204ENST00000546939 779 ntTSL 3 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AC024267.1-201ENST00000582320 895 ntBASIC12.06□□□□□ -0.48
LINC00477Q96M19 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AL049840.3-201ENST00000602669 611 ntBASIC12.06□□□□□ -0.48
LINC00477Q96M19 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00477Q96M19 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
LINC00477Q96M19 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00477Q96M19 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00477Q96M19 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms