Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC5□□□□□ -1.61
SYNE1Q8NF91 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC5□□□□□ -1.61
SYNE1Q8NF91 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC5□□□□□ -1.61
SYNE1Q8NF91 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 NKILA-202ENST00000614771 2598 ntBASIC5□□□□□ -1.61
SYNE1Q8NF91 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC5□□□□□ -1.61
SYNE1Q8NF91 WNT11-204ENST00000621122 789 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC5□□□□□ -1.61
SYNE1Q8NF91 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC5□□□□□ -1.61
SYNE1Q8NF91 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 DFFBP1-201ENST00000433250 979 ntBASIC5□□□□□ -1.61
SYNE1Q8NF91 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC5□□□□□ -1.61
SYNE1Q8NF91 BANF1P1-201ENST00000553684 263 ntBASIC5□□□□□ -1.61
SYNE1Q8NF91 AC105021.1-202ENST00000570572 669 ntBASIC5□□□□□ -1.61
SYNE1Q8NF91 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC5□□□□□ -1.61
SYNE1Q8NF91 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC5□□□□□ -1.61
SYNE1Q8NF91 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
SYNE1Q8NF91 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SATB1-217ENST00000493952 626 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AL009183.1-201ENST00000603760 355 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms