Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
BEST3Q8N1M1 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 AC103702.1-201ENST00000548801 2630 ntBASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.92□□□□□ -0.02
BEST3Q8N1M1 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.92□□□□□ -0.02
BEST3Q8N1M1 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.92□□□□□ -0.02
BEST3Q8N1M1 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
BEST3Q8N1M1 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 CRB3P1-201ENST00000449338 276 ntBASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AL139010.1-201ENST00000454878 894 ntBASIC14.91□□□□□ -0.02
BEST3Q8N1M1 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AL512361.1-201ENST00000554200 418 ntBASIC14.91□□□□□ -0.02
BEST3Q8N1M1 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
BEST3Q8N1M1 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms