Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL18A1P39060 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
COL18A1P39060 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC20.65■□□□□ 0.9
COL18A1P39060 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.65■□□□□ 0.9
COL18A1P39060 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.65■□□□□ 0.9
COL18A1P39060 RN7SL574P-201ENST00000581512 297 ntBASIC20.65■□□□□ 0.9
COL18A1P39060 RN7SL713P-201ENST00000582127 302 ntBASIC20.65■□□□□ 0.9
COL18A1P39060 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC20.65■□□□□ 0.9
COL18A1P39060 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL18A1P39060 KRT8P14-201ENST00000414254 1442 ntBASIC20.65■□□□□ 0.9
COL18A1P39060 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL18A1P39060 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.65■□□□□ 0.9
COL18A1P39060 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL18A1P39060 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL18A1P39060 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC20.64■□□□□ 0.9
COL18A1P39060 HINT2P1-201ENST00000419438 481 ntBASIC20.64■□□□□ 0.9
COL18A1P39060 NKAIN1P1-201ENST00000435754 582 ntBASIC20.64■□□□□ 0.9
COL18A1P39060 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC20.64■□□□□ 0.9
COL18A1P39060 AL391280.1-201ENST00000506969 1062 ntBASIC20.64■□□□□ 0.9
COL18A1P39060 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC20.64■□□□□ 0.9
COL18A1P39060 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL18A1P39060 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.64■□□□□ 0.89
COL18A1P39060 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
COL18A1P39060 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL18A1P39060 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.64■□□□□ 0.89
COL18A1P39060 FNTAP2-201ENST00000430308 634 ntBASIC20.64■□□□□ 0.89
COL18A1P39060 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL18A1P39060 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
COL18A1P39060 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.64■□□□□ 0.89
COL18A1P39060 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL18A1P39060 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC20.64■□□□□ 0.89
COL18A1P39060 NKG7-204ENST00000595217 816 ntTSL 2 BASIC20.64■□□□□ 0.89
COL18A1P39060 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.63■□□□□ 0.89
COL18A1P39060 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
COL18A1P39060 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC20.63■□□□□ 0.89
COL18A1P39060 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.63■□□□□ 0.89
COL18A1P39060 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
COL18A1P39060 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 AL662890.1-201ENST00000396818 632 ntBASIC20.63■□□□□ 0.89
COL18A1P39060 AL139094.1-201ENST00000405549 1188 ntBASIC20.63■□□□□ 0.89
COL18A1P39060 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC20.63■□□□□ 0.89
COL18A1P39060 AC022217.1-201ENST00000521069 738 ntBASIC20.63■□□□□ 0.89
COL18A1P39060 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL18A1P39060 PPY2P-201ENST00000582808 702 ntBASIC20.63■□□□□ 0.89
COL18A1P39060 NAT9-224ENST00000583757 583 ntTSL 3 BASIC20.63■□□□□ 0.89
COL18A1P39060 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.63■□□□□ 0.89
COL18A1P39060 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.63■□□□□ 0.89
COL18A1P39060 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL18A1P39060 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC20.63■□□□□ 0.89
COL18A1P39060 MTHFR-217ENST00000641820 1569 ntBASIC20.63■□□□□ 0.89
COL18A1P39060 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL18A1P39060 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC20.62■□□□□ 0.89
COL18A1P39060 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 AC091046.1-201ENST00000331871 207 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 PARP8-206ENST00000503665 572 ntTSL 4 BASIC20.62■□□□□ 0.89
COL18A1P39060 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 AC138649.2-201ENST00000615886 705 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 ENPP7P14-201ENST00000621765 1040 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms