Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 AC107890.1-201ENST00000422478 521 ntBASIC15.1■□□□□ 0.01
LDB3O75112 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.1■□□□□ 0.01
LDB3O75112 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.1■□□□□ 0.01
LDB3O75112 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LDB3O75112 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 AC093512.1-201ENST00000617969 520 ntBASIC15.1■□□□□ 0.01
LDB3O75112 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 AC132872.4-202ENST00000622924 2756 ntBASIC15.1■□□□□ 0.01
LDB3O75112 AL365203.3-201ENST00000609742 2057 ntBASIC15.1■□□□□ 0.01
LDB3O75112 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LDB3O75112 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.1■□□□□ 0.01
LDB3O75112 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LDB3O75112 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LDB3O75112 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.09■□□□□ 0.01
LDB3O75112 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 NFIC-211ENST00000641145 8399 ntBASIC15.09■□□□□ 0.01
LDB3O75112 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.09■□□□□ 0.01
LDB3O75112 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 AC004987.2-201ENST00000395959 1148 ntBASIC15.09■□□□□ 0.01
LDB3O75112 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.09■□□□□ 0.01
LDB3O75112 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
LDB3O75112 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 AC069120.2-201ENST00000524091 540 ntBASIC15.09■□□□□ 0.01
LDB3O75112 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 DUX4L27-201ENST00000554796 1261 ntBASIC15.09■□□□□ 0.01
LDB3O75112 AC140878.1-201ENST00000565277 250 ntBASIC15.09■□□□□ 0.01
LDB3O75112 AL589739.1-201ENST00000607720 493 ntBASIC15.09■□□□□ 0.01
LDB3O75112 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
LDB3O75112 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.09■□□□□ 0.01
LDB3O75112 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LDB3O75112 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LDB3O75112 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.08■□□□□ 0.01
LDB3O75112 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
LDB3O75112 AC018892.3-201ENST00000623986 2499 ntBASIC15.08■□□□□ 0.01
LDB3O75112 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
LDB3O75112 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LDB3O75112 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0
LDB3O75112 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 HYMAI-201ENST00000635591 3347 ntBASIC15.08■□□□□ 0
LDB3O75112 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LDB3O75112 TREML5P-201ENST00000421694 576 ntBASIC15.08■□□□□ 0
LDB3O75112 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.08■□□□□ 0
LDB3O75112 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.08■□□□□ 0
LDB3O75112 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.08■□□□□ 0
LDB3O75112 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.08■□□□□ 0
LDB3O75112 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.08■□□□□ 0
LDB3O75112 SPDYE12P-201ENST00000618416 771 ntBASIC15.08■□□□□ 0
LDB3O75112 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.08■□□□□ 0
LDB3O75112 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LDB3O75112 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms