Protein–RNA interactions for Protein: A6NGU7

LINC01546, Putative uncharacterized protein encoded by LINC01546, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01546A6NGU7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 GPX1P2-201ENST00000429271 606 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 BX005266.1-201ENST00000473402 457 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MIR4497-201ENST00000583208 89 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 NTF6B-201ENST00000591913 560 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AL805961.1-202ENST00000641562 540 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AC152010.1-201ENST00000415779 2006 ntBASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01546A6NGU7 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 NSUN5P1-202ENST00000421140 1535 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 NSUN5P2-203ENST00000457352 1529 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 AC012569.1-201ENST00000591191 1524 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CHCHD2P8-201ENST00000429873 447 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 TSPY20P-201ENST00000450910 630 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 AC011467.4-201ENST00000594891 528 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 AC004706.3-202ENST00000621574 984 ntBASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
LINC01546A6NGU7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms