Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 REXO1L1P-202ENST00000608646 1974 ntBASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 MTND6P24-201ENST00000440466 518 ntBASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 AC004449.1-201ENST00000564240 433 ntBASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 AL133215.2-201ENST00000609242 977 ntBASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.89
SMC4Q9NTJ3 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.58■□□□□ 0.88
SMC4Q9NTJ3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 RN7SL828P-201ENST00000607615 303 ntBASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 GPALPP1-207ENST00000611650 899 ntBASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMC4Q9NTJ3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 METTL21AP1-201ENST00000438852 635 ntBASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMC4Q9NTJ3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms