Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC011495.1-201ENST00000498085 584 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC055876.2-201ENST00000531834 546 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 HILS1-202ENST00000545329 423 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC132938.2-201ENST00000579188 680 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 MIR6069-201ENST00000620069 79 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AC004461.2-201ENST00000629517 803 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 AL591163.1-201ENST00000641757 987 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 NFIC-211ENST00000641145 8399 ntBASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.06■□□□□ 0.16
TM9SF3Q9HD45 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 AL139010.1-201ENST00000454878 894 ntBASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 TPRX2P-201ENST00000535362 881 ntBASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 AL109936.8-201ENST00000641772 604 ntBASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.05■□□□□ 0.16
TM9SF3Q9HD45 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.04■□□□□ 0.16
TM9SF3Q9HD45 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms