Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 AC128714.1-201ENST00000637035 887 ntBASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 KRT8P19-201ENST00000551916 1455 ntBASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 HNRNPA1P32-201ENST00000396326 963 ntBASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 BX284668.4-201ENST00000453917 508 ntBASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
SHANK3Q9BYB0 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 ETV2-208ENST00000621247 941 ntTSL 5 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHANK3Q9BYB0 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AGGF1P2-201ENST00000426656 2106 ntBASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AKR7A2P1-201ENST00000460134 915 ntBASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AC044849.1-201ENST00000519737 1188 ntBASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AC020914.3-201ENST00000594712 304 ntBASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 SPCS2P2-201ENST00000603270 608 ntBASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.27■□□□□ 0.83
SHANK3Q9BYB0 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms