Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC3Q9BQI4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC3Q9BQI4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CCDC3Q9BQI4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC3Q9BQI4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
CCDC3Q9BQI4 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC005622.1-201ENST00000636801 1703 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 ATP5G2P4-201ENST00000442175 420 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 GPR53P-205ENST00000457298 1084 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 POU5F1P6-201ENST00000466990 990 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 GIMAP3P-201ENST00000495150 836 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 WASH4P-201ENST00000564273 1246 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 SRD5A3P1-201ENST00000603021 949 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 MIR6069-201ENST00000620069 79 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC007431.3-201ENST00000623221 587 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AC004461.2-201ENST00000629517 803 ntBASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC3Q9BQI4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 U82695.1-201ENST00000635752 1889 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 SLC7A15P-201ENST00000424028 1363 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 MIR600HG-201ENST00000449175 5984 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 ARSEP1-201ENST00000420443 635 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AC011495.1-201ENST00000498085 584 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AC055876.2-201ENST00000531834 546 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 IGHV3-72-202ENST00000621503 303 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 AL109936.8-201ENST00000641772 604 ntBASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC3Q9BQI4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms