Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CDX2Q99626 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.44■□□□□ 0.22
CDX2Q99626 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.44■□□□□ 0.22
CDX2Q99626 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX2Q99626 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX2Q99626 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 AC136604.1-201ENST00000418535 575 ntBASIC16.43■□□□□ 0.22
CDX2Q99626 RPS9P1-201ENST00000419943 583 ntBASIC16.43■□□□□ 0.22
CDX2Q99626 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 AC079112.1-201ENST00000454972 939 ntBASIC16.43■□□□□ 0.22
CDX2Q99626 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.43■□□□□ 0.22
CDX2Q99626 AC100850.1-201ENST00000506768 649 ntBASIC16.43■□□□□ 0.22
CDX2Q99626 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.43■□□□□ 0.22
CDX2Q99626 MIR4649-201ENST00000582839 64 ntBASIC16.43■□□□□ 0.22
CDX2Q99626 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX2Q99626 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CDX2Q99626 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDX2Q99626 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX2Q99626 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.43■□□□□ 0.22
CDX2Q99626 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.43■□□□□ 0.22
CDX2Q99626 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 HIST2H2BB-201ENST00000449108 381 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 AC114812.1-204ENST00000449669 728 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 MARK2P5-201ENST00000507649 634 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 AP002490.2-201ENST00000524791 560 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.42■□□□□ 0.22
CDX2Q99626 RBM8B-201ENST00000555532 525 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 AC103810.10-201ENST00000606504 343 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 ENPP7P14-201ENST00000621765 1040 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 AC138466.4-201ENST00000623965 852 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.42■□□□□ 0.22
CDX2Q99626 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.42■□□□□ 0.22
CDX2Q99626 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDX2Q99626 KRT8P4-201ENST00000509735 1454 ntBASIC16.42■□□□□ 0.22
CDX2Q99626 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms