Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE4Q8N205 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE4Q8N205 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 AP001282.1-201ENST00000531301 1499 ntBASIC19.79■□□□□ 0.76
SYNE4Q8N205 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 PCDHA14-201ENST00000506751 2298 ntBASIC19.79■□□□□ 0.76
SYNE4Q8N205 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 ACTG1P3-201ENST00000431775 1114 ntBASIC19.79■□□□□ 0.76
SYNE4Q8N205 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 TDH-203ENST00000531764 1110 ntBASIC19.79■□□□□ 0.76
SYNE4Q8N205 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE4Q8N205 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SYNE4Q8N205 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 BCRP2-202ENST00000447763 634 ntBASIC19.78■□□□□ 0.76
SYNE4Q8N205 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 BCRP6-201ENST00000510112 632 ntBASIC19.78■□□□□ 0.76
SYNE4Q8N205 BCRP7-201ENST00000511549 544 ntBASIC19.78■□□□□ 0.76
SYNE4Q8N205 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE4Q8N205 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE4Q8N205 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 AC099336.1-201ENST00000417053 1171 ntBASIC19.77■□□□□ 0.76
SYNE4Q8N205 VDAC1P7-201ENST00000462417 847 ntBASIC19.77■□□□□ 0.76
SYNE4Q8N205 SLED1-202ENST00000512051 380 ntBASIC19.77■□□□□ 0.76
SYNE4Q8N205 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms