Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 ACTG1P17-201ENST00000558391 1119 ntBASIC19.9■□□□□ 0.78
RC3H1Q5TC82 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 ME2P1-201ENST00000426028 1970 ntBASIC19.9■□□□□ 0.78
RC3H1Q5TC82 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.9■□□□□ 0.78
RC3H1Q5TC82 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
RC3H1Q5TC82 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
RC3H1Q5TC82 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
RC3H1Q5TC82 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RC3H1Q5TC82 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.88■□□□□ 0.77
RC3H1Q5TC82 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 BX539320.1-201ENST00000623759 877 ntBASIC19.88■□□□□ 0.77
RC3H1Q5TC82 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RC3H1Q5TC82 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RC3H1Q5TC82 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.86■□□□□ 0.77
RC3H1Q5TC82 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms