Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 AL158212.4-201ENST00000624062 1286 ntBASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.4□□□□□ -0.1
RNFT1Q5M7Z0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 ACA64.2-201ENST00000459014 129 ntBASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 KRT17P8-201ENST00000540749 863 ntBASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 PCDHA12-202ENST00000613593 2588 ntBASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RNFT1Q5M7Z0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 HAUS4P1-201ENST00000406739 1145 ntBASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AC104596.2-201ENST00000512793 793 ntBASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 RPSAP52-203ENST00000622976 1023 ntBASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AL033527.5-201ENST00000641382 801 ntBASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
RNFT1Q5M7Z0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms