Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.32■□□□□ 0.2
USP39Q53GS9 AC020765.3-201ENST00000613051 740 ntBASIC16.32■□□□□ 0.2
USP39Q53GS9 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.32■□□□□ 0.2
USP39Q53GS9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
USP39Q53GS9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP39Q53GS9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.32■□□□□ 0.2
USP39Q53GS9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.31■□□□□ 0.2
USP39Q53GS9 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 SPDYE17-201ENST00000412399 783 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 AC093724.1-201ENST00000448659 1027 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 SPDYE18-201ENST00000510091 1050 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.31■□□□□ 0.2
USP39Q53GS9 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
USP39Q53GS9 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.31■□□□□ 0.2
USP39Q53GS9 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 AC099568.2-201ENST00000609194 695 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 AC004461.2-201ENST00000629517 803 ntBASIC16.31■□□□□ 0.2
USP39Q53GS9 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.31■□□□□ 0.2
USP39Q53GS9 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.31■□□□□ 0.2
USP39Q53GS9 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP39Q53GS9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
USP39Q53GS9 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 AL589702.1-201ENST00000641229 1509 ntBASIC16.3■□□□□ 0.2
USP39Q53GS9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 AC006449.5-201ENST00000610658 2098 ntBASIC16.3■□□□□ 0.2
USP39Q53GS9 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USP39Q53GS9 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
USP39Q53GS9 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 RN7SL837P-201ENST00000463010 287 ntBASIC16.3■□□□□ 0.2
USP39Q53GS9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.3■□□□□ 0.2
USP39Q53GS9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 AC004790.1-201ENST00000612686 536 ntBASIC16.3■□□□□ 0.2
USP39Q53GS9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.3■□□□□ 0.2
USP39Q53GS9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
USP39Q53GS9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP39Q53GS9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
USP39Q53GS9 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms