Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 REXO1L8P-201ENST00000604378 1897 ntBASIC17.03■□□□□ 0.32
USP41Q3LFD5 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 ACA64.2-201ENST00000459014 129 ntBASIC17.02■□□□□ 0.32
USP41Q3LFD5 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 LINC01115-203ENST00000606068 577 ntBASIC17.02■□□□□ 0.32
USP41Q3LFD5 MIR8072-201ENST00000614241 80 ntBASIC17.02■□□□□ 0.32
USP41Q3LFD5 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
USP41Q3LFD5 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
USP41Q3LFD5 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.02■□□□□ 0.31
USP41Q3LFD5 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.02■□□□□ 0.31
USP41Q3LFD5 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 DOC2GP-204ENST00000639052 2548 ntBASIC17.02■□□□□ 0.31
USP41Q3LFD5 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.02■□□□□ 0.31
USP41Q3LFD5 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
USP41Q3LFD5 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.02■□□□□ 0.31
USP41Q3LFD5 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 FLJ38576-201ENST00000623820 2459 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AC079776.1-201ENST00000401540 1152 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AC007389.4-201ENST00000454674 793 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 RAB43P1-201ENST00000561790 589 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 AL033527.5-201ENST00000641382 801 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 CDC14C-201ENST00000428251 1719 ntBASIC17.01■□□□□ 0.31
USP41Q3LFD5 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USP41Q3LFD5 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.01■□□□□ 0.31
USP41Q3LFD5 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
USP41Q3LFD5 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
USP41Q3LFD5 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17■□□□□ 0.31
USP41Q3LFD5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17■□□□□ 0.31
USP41Q3LFD5 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USP41Q3LFD5 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
USP41Q3LFD5 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
USP41Q3LFD5 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17■□□□□ 0.31
USP41Q3LFD5 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
USP41Q3LFD5 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USP41Q3LFD5 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USP41Q3LFD5 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms