Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.74■□□□□ 0.27
CDH6P55285 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDH6P55285 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CDH6P55285 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 HYMAI-201ENST00000635591 3347 ntBASIC16.73■□□□□ 0.27
CDH6P55285 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.73■□□□□ 0.27
CDH6P55285 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.73■□□□□ 0.27
CDH6P55285 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.73■□□□□ 0.27
CDH6P55285 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.73■□□□□ 0.27
CDH6P55285 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.73■□□□□ 0.27
CDH6P55285 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 AC022145.2-201ENST00000598203 171 ntBASIC16.73■□□□□ 0.27
CDH6P55285 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 AL139384.1-201ENST00000612143 3047 ntBASIC16.73■□□□□ 0.27
CDH6P55285 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.73■□□□□ 0.27
CDH6P55285 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 TSPY26P-202ENST00000565928 3884 ntBASIC16.73■□□□□ 0.27
CDH6P55285 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CDH6P55285 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH6P55285 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH6P55285 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH6P55285 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDH6P55285 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDH6P55285 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CDH6P55285 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH6P55285 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
CDH6P55285 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH6P55285 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH6P55285 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH6P55285 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.72■□□□□ 0.27
CDH6P55285 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH6P55285 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH6P55285 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH6P55285 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH6P55285 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH6P55285 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms