Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 AL355334.1-201ENST00000417713 215 ntBASIC21.89■■□□□ 1.1
MSH6P52701 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC21.89■■□□□ 1.1
MSH6P52701 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC21.89■■□□□ 1.1
MSH6P52701 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
MSH6P52701 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
MSH6P52701 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC21.89■■□□□ 1.1
MSH6P52701 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
MSH6P52701 AMT-206ENST00000458307 1860 ntTSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
MSH6P52701 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
MSH6P52701 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.89■■□□□ 1.09
MSH6P52701 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
MSH6P52701 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH6P52701 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
MSH6P52701 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
MSH6P52701 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.89■■□□□ 1.09
MSH6P52701 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
MSH6P52701 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH6P52701 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH6P52701 LBH-202ENST00000401506 485 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH6P52701 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 AC136604.1-201ENST00000418535 575 ntBASIC21.88■■□□□ 1.09
MSH6P52701 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH6P52701 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 AC018635.2-201ENST00000608625 364 ntBASIC21.88■■□□□ 1.09
MSH6P52701 AL353726.2-201ENST00000623259 884 ntBASIC21.88■■□□□ 1.09
MSH6P52701 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC21.88■■□□□ 1.09
MSH6P52701 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
MSH6P52701 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
MSH6P52701 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
MSH6P52701 FZD10-202ENST00000539839 3282 ntBASIC21.88■■□□□ 1.09
MSH6P52701 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH6P52701 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH6P52701 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH6P52701 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 MPV17-205ENST00000402310 906 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 AC044849.1-201ENST00000519737 1188 ntBASIC21.87■■□□□ 1.09
MSH6P52701 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
MSH6P52701 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC21.87■■□□□ 1.09
MSH6P52701 PRKXP1-201ENST00000561423 1122 ntBASIC21.87■■□□□ 1.09
MSH6P52701 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH6P52701 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
MSH6P52701 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 AL354989.2-201ENST00000435838 1540 ntBASIC21.87■■□□□ 1.09
MSH6P52701 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.87■■□□□ 1.09
MSH6P52701 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
MSH6P52701 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 AC079178.1-201ENST00000420915 656 ntBASIC21.87■■□□□ 1.09
MSH6P52701 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 SUPT4H1P2-201ENST00000501248 353 ntBASIC21.87■■□□□ 1.09
MSH6P52701 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms