Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SCN4AP35499 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SCN4AP35499 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 RPSAP31-201ENST00000416648 895 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 AC012618.1-201ENST00000461223 412 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 RN7SL8P-201ENST00000461771 266 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 AC100850.1-201ENST00000506768 649 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 AC005740.2-201ENST00000511085 419 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.53■□□□□ 0.56
SCN4AP35499 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.53■□□□□ 0.56
SCN4AP35499 DPM3-202ENST00000368399 517 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 AC234644.1-201ENST00000406065 370 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.53■□□□□ 0.56
SCN4AP35499 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.53■□□□□ 0.56
SCN4AP35499 LRRC59-203ENST00000576448 1531 ntBASIC18.53■□□□□ 0.56
SCN4AP35499 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SCN4AP35499 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.53■□□□□ 0.56
SCN4AP35499 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.52■□□□□ 0.56
SCN4AP35499 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SCN4AP35499 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SCN4AP35499 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SCN4AP35499 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.52■□□□□ 0.56
SCN4AP35499 AC114812.1-204ENST00000449669 728 ntBASIC18.52■□□□□ 0.56
SCN4AP35499 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.52■□□□□ 0.56
SCN4AP35499 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SCN4AP35499 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.52■□□□□ 0.56
SCN4AP35499 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.52■□□□□ 0.56
SCN4AP35499 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.52■□□□□ 0.56
SCN4AP35499 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.52■□□□□ 0.56
SCN4AP35499 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
SCN4AP35499 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SCN4AP35499 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.52■□□□□ 0.56
SCN4AP35499 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SCN4AP35499 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SCN4AP35499 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SCN4AP35499 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.52■□□□□ 0.55
SCN4AP35499 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
SCN4AP35499 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 KRT18P66-201ENST00000452970 1269 ntBASIC18.51■□□□□ 0.55
SCN4AP35499 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.51■□□□□ 0.55
SCN4AP35499 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SCN4AP35499 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SCN4AP35499 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SCN4AP35499 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SCN4AP35499 AC011742.3-201ENST00000439053 820 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms