Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.62□□□□□ -0.07
HOXD4P09016 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.62□□□□□ -0.07
HOXD4P09016 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 AC105021.1-202ENST00000570572 669 ntBASIC14.62□□□□□ -0.07
HOXD4P09016 SPDYE12P-201ENST00000618416 771 ntBASIC14.62□□□□□ -0.07
HOXD4P09016 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXD4P09016 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXD4P09016 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.62□□□□□ -0.07
HOXD4P09016 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
HOXD4P09016 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HOXD4P09016 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXD4P09016 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
HOXD4P09016 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
HOXD4P09016 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
HOXD4P09016 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXD4P09016 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.62□□□□□ -0.07
HOXD4P09016 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HOXD4P09016 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXD4P09016 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXD4P09016 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.61□□□□□ -0.07
HOXD4P09016 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.61□□□□□ -0.07
HOXD4P09016 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.61□□□□□ -0.07
HOXD4P09016 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 SERBP1P5-201ENST00000510079 1181 ntBASIC14.61□□□□□ -0.07
HOXD4P09016 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.61□□□□□ -0.07
HOXD4P09016 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 AC092068.3-201ENST00000587894 2016 ntBASIC14.61□□□□□ -0.07
HOXD4P09016 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.61□□□□□ -0.07
HOXD4P09016 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.61□□□□□ -0.07
HOXD4P09016 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
HOXD4P09016 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXD4P09016 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HOXD4P09016 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXD4P09016 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXD4P09016 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.6□□□□□ -0.07
HOXD4P09016 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HOXD4P09016 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.6□□□□□ -0.07
HOXD4P09016 MTND6P24-201ENST00000440466 518 ntBASIC14.6□□□□□ -0.07
HOXD4P09016 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms