Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AL353705.2-201ENST00000428243 662 ntBASIC18.53■□□□□ 0.56
CTDNEP1O95476 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC004967.1-201ENST00000453589 447 ntBASIC18.53■□□□□ 0.56
CTDNEP1O95476 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC109322.1-201ENST00000524499 1264 ntBASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 RN7SL828P-201ENST00000607615 303 ntBASIC18.53■□□□□ 0.56
CTDNEP1O95476 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AC112693.3-201ENST00000624819 1983 ntBASIC18.52■□□□□ 0.56
CTDNEP1O95476 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 DNAJB3-202ENST00000449667 1266 ntBASIC18.52■□□□□ 0.56
CTDNEP1O95476 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CTDNEP1O95476 AL596442.2-201ENST00000610240 980 ntBASIC18.52■□□□□ 0.56
CTDNEP1O95476 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTDNEP1O95476 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTDNEP1O95476 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.52■□□□□ 0.55
CTDNEP1O95476 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTDNEP1O95476 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CTDNEP1O95476 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTDNEP1O95476 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CTDNEP1O95476 TMBIM7P-203ENST00000641617 1718 ntBASIC18.52■□□□□ 0.55
CTDNEP1O95476 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AL607033.1-201ENST00000623900 1599 ntBASIC18.51■□□□□ 0.55
CTDNEP1O95476 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AL512356.2-201ENST00000546955 174 ntBASIC18.51■□□□□ 0.55
CTDNEP1O95476 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.51■□□□□ 0.55
CTDNEP1O95476 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTDNEP1O95476 AC127383.1-201ENST00000444697 1800 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms