Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
SIX3O95343 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.72■□□□□ 0.11
SIX3O95343 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.72■□□□□ 0.11
SIX3O95343 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 AC023274.1-201ENST00000418278 595 ntBASIC15.72■□□□□ 0.11
SIX3O95343 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 AL591424.1-201ENST00000442569 1213 ntBASIC15.72■□□□□ 0.11
SIX3O95343 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
SIX3O95343 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.72■□□□□ 0.11
SIX3O95343 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 FAM197Y3-203ENST00000618346 717 ntBASIC15.72■□□□□ 0.11
SIX3O95343 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.72■□□□□ 0.11
SIX3O95343 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
SIX3O95343 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SIX3O95343 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SIX3O95343 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SIX3O95343 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.71■□□□□ 0.11
SIX3O95343 AL355306.1-201ENST00000415580 579 ntBASIC15.71■□□□□ 0.11
SIX3O95343 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.71■□□□□ 0.11
SIX3O95343 AC098859.1-201ENST00000502915 1238 ntBASIC15.71■□□□□ 0.11
SIX3O95343 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 AL135744.1-201ENST00000565098 629 ntBASIC15.71■□□□□ 0.11
SIX3O95343 SPTSSB-204ENST00000617024 1292 ntBASIC15.71■□□□□ 0.11
SIX3O95343 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.71■□□□□ 0.11
SIX3O95343 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SIX3O95343 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SIX3O95343 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
SIX3O95343 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
SIX3O95343 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
SIX3O95343 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SIX3O95343 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.1
SIX3O95343 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SIX3O95343 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SIX3O95343 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SIX3O95343 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SIX3O95343 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms