Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TFAMP1-201ENST00000412727 736 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AL355306.1-201ENST00000415580 579 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AC023274.1-201ENST00000418278 595 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AC142381.1-201ENST00000426099 345 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AC105233.2-201ENST00000523697 349 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AF228730.5-201ENST00000530288 346 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 MIR4313-201ENST00000580760 101 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AC092902.6-201ENST00000641783 218 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 LINC02228-204ENST00000642115 2962 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AL136982.4-201ENST00000437689 1740 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AC112693.3-201ENST00000624819 1983 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 AL513477.1-201ENST00000602865 2407 ntBASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TCRBV7S3A2A0A539 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AL671277.1-201ENST00000429656 993 ntBASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ADH5P3-201ENST00000433842 1137 ntBASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AC091951.1-201ENST00000512854 2465 ntBASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 AC027601.4-201ENST00000611259 610 ntBASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TCRBV7S3A2A0A539 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TCRBV7S3A2A0A539 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms