Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.23■□□□□ 0.03
ATG4BQ9Y4P1 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4BQ9Y4P1 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.23■□□□□ 0.03
ATG4BQ9Y4P1 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4BQ9Y4P1 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AP005117.1-202ENST00000581724 1908 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC011477.6-201ENST00000604980 1927 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AL139400.1-201ENST00000366220 510 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AL139010.1-201ENST00000454878 894 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 HLA-J-203ENST00000494367 1087 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC109322.1-201ENST00000524499 1264 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC003101.2-201ENST00000612557 442 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 LINC00628-201ENST00000628516 1289 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 BNIP3P1-202ENST00000550043 1585 ntBASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4BQ9Y4P1 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 AL353705.2-201ENST00000428243 662 ntBASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 BANF1P1-201ENST00000553684 263 ntBASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 MIR4453-201ENST00000584019 89 ntBASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4BQ9Y4P1 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4BQ9Y4P1 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
ATG4BQ9Y4P1 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4BQ9Y4P1 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4BQ9Y4P1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms