Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 MKNK2P1-201ENST00000437526 628 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 ACTG1P14-201ENST00000446382 1122 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC092865.5-201ENST00000545435 363 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AL078644.1-201ENST00000609881 752 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 AC092474.2-201ENST00000424288 719 ntBASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 HTR5BP-201ENST00000430851 1154 ntBASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 AC005829.1-201ENST00000570002 483 ntBASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.03□□□□□ -0.32
FOXA2Q9Y261 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.03□□□□□ -0.32
FOXA2Q9Y261 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 AC067930.6-201ENST00000623257 4947 ntBASIC13.02□□□□□ -0.32
FOXA2Q9Y261 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
FOXA2Q9Y261 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms