Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 CXCL1P1-201ENST00000502804 216 ntBASIC15.66■□□□□ 0.1
VPS4AQ9UN37 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.66■□□□□ 0.1
VPS4AQ9UN37 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 AC010491.1-201ENST00000563101 2797 ntBASIC15.66■□□□□ 0.1
VPS4AQ9UN37 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4AQ9UN37 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 CNN2P2-201ENST00000443536 909 ntBASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 CNN2P3-201ENST00000450201 906 ntBASIC15.65■□□□□ 0.1
VPS4AQ9UN37 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AC015911.4-201ENST00000588022 1070 ntBASIC15.65■□□□□ 0.1
VPS4AQ9UN37 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AL136317.3-201ENST00000618497 906 ntBASIC15.65■□□□□ 0.1
VPS4AQ9UN37 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4AQ9UN37 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
VPS4AQ9UN37 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
VPS4AQ9UN37 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 AC105917.1-201ENST00000506637 2539 ntBASIC15.64■□□□□ 0.09
VPS4AQ9UN37 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 AL603832.2-201ENST00000566195 2125 ntBASIC15.64■□□□□ 0.09
VPS4AQ9UN37 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4AQ9UN37 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms