Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 BTBD7P1-201ENST00000447253 1453 ntBASIC16.12■□□□□ 0.17
LHX3Q9UBR4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 MIR4745-201ENST00000577608 62 ntBASIC16.12■□□□□ 0.17
LHX3Q9UBR4 RN7SL204P-201ENST00000582831 262 ntBASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AC074044.1-201ENST00000609673 707 ntBASIC16.12■□□□□ 0.17
LHX3Q9UBR4 AC004790.1-201ENST00000612686 536 ntBASIC16.12■□□□□ 0.17
LHX3Q9UBR4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
LHX3Q9UBR4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC018695.7-201ENST00000624587 2492 ntBASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 SERBP1P5-201ENST00000510079 1181 ntBASIC16.11■□□□□ 0.17
LHX3Q9UBR4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC135586.1-201ENST00000539323 574 ntBASIC16.11■□□□□ 0.17
LHX3Q9UBR4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 AC004461.2-201ENST00000629517 803 ntBASIC16.11■□□□□ 0.17
LHX3Q9UBR4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LHX3Q9UBR4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AL607033.1-201ENST00000623900 1599 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AC236430.1-201ENST00000402231 743 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AC002472.2-201ENST00000442739 958 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 MIR4313-201ENST00000580760 101 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 LINC01115-203ENST00000606068 577 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.1■□□□□ 0.17
LHX3Q9UBR4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.1■□□□□ 0.17
LHX3Q9UBR4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms