Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 AC018892.3-201ENST00000623986 2499 ntBASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 CICP6-201ENST00000457191 2729 ntBASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.62■□□□□ 0.89
SMC4Q9NTJ3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AC004987.2-201ENST00000395959 1148 ntBASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 SPDYE7P-202ENST00000420373 878 ntBASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC4Q9NTJ3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 AC069262.1-201ENST00000539058 672 ntBASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 AC093028.1-201ENST00000622998 982 ntBASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 Z92544.3-201ENST00000624747 417 ntBASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC4Q9NTJ3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 EHF-205ENST00000527935 557 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.59■□□□□ 0.89
SMC4Q9NTJ3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms