Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.3■□□□□ 0.52
ERCC4Q92889 AC093724.1-201ENST00000448659 1027 ntBASIC18.3■□□□□ 0.52
ERCC4Q92889 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 RNA5SP415-201ENST00000517246 115 ntBASIC18.3■□□□□ 0.52
ERCC4Q92889 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.3■□□□□ 0.52
ERCC4Q92889 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
ERCC4Q92889 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
ERCC4Q92889 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC4Q92889 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC4Q92889 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.29■□□□□ 0.52
ERCC4Q92889 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC4Q92889 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC4Q92889 AL645728.2-201ENST00000641974 660 ntBASIC18.29■□□□□ 0.52
ERCC4Q92889 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC4Q92889 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC4Q92889 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.28■□□□□ 0.52
ERCC4Q92889 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ERCC4Q92889 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.28■□□□□ 0.52
ERCC4Q92889 CRYGEP-201ENST00000412192 528 ntBASIC18.28■□□□□ 0.52
ERCC4Q92889 PMS2P4-201ENST00000412466 1052 ntBASIC18.28■□□□□ 0.52
ERCC4Q92889 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.28■□□□□ 0.52
ERCC4Q92889 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.28■□□□□ 0.52
ERCC4Q92889 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 AL121894.2-201ENST00000602977 491 ntBASIC18.28■□□□□ 0.52
ERCC4Q92889 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.28■□□□□ 0.52
ERCC4Q92889 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 AC022532.1-201ENST00000624563 1728 ntBASIC18.28■□□□□ 0.52
ERCC4Q92889 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC4Q92889 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC4Q92889 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC4Q92889 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms