Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX4Q06945 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SOX4Q06945 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX4Q06945 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX4Q06945 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX4Q06945 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX4Q06945 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX4Q06945 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SOX4Q06945 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX4Q06945 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX4Q06945 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 CLK3P2-201ENST00000427566 1453 ntBASIC17.06■□□□□ 0.32
SOX4Q06945 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 CU639417.3-201ENST00000624240 1404 ntBASIC17.06■□□□□ 0.32
SOX4Q06945 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX4Q06945 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SOX4Q06945 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.06■□□□□ 0.32
SOX4Q06945 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.06■□□□□ 0.32
SOX4Q06945 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
SOX4Q06945 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 AC093726.1-201ENST00000608064 963 ntBASIC17.06■□□□□ 0.32
SOX4Q06945 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX4Q06945 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX4Q06945 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX4Q06945 IGHV3-72-202ENST00000621503 303 ntBASIC17.06■□□□□ 0.32
SOX4Q06945 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 AC069224.1-201ENST00000566372 1715 ntBASIC17.06■□□□□ 0.32
SOX4Q06945 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SOX4Q06945 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX4Q06945 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 AL118508.1-201ENST00000613502 2345 ntBASIC17.05■□□□□ 0.32
SOX4Q06945 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX4Q06945 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 INE1-201ENST00000456273 945 ntBASIC17.05■□□□□ 0.32
SOX4Q06945 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.05■□□□□ 0.32
SOX4Q06945 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX4Q06945 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX4Q06945 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX4Q06945 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX4Q06945 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms