Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 TSSK5P-201ENST00000423978 907 ntBASIC14.89□□□□□ -0.03
RNF4P78317 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.89□□□□□ -0.03
RNF4P78317 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.89□□□□□ -0.03
RNF4P78317 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 AL096865.1-201ENST00000606796 927 ntBASIC14.89□□□□□ -0.03
RNF4P78317 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.89□□□□□ -0.03
RNF4P78317 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 AC087499.5-201ENST00000452760 1342 ntBASIC14.89□□□□□ -0.03
RNF4P78317 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 AC007326.2-201ENST00000624224 7579 ntBASIC14.88□□□□□ -0.03
RNF4P78317 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.88□□□□□ -0.03
RNF4P78317 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.88□□□□□ -0.03
RNF4P78317 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.88□□□□□ -0.03
RNF4P78317 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 SERBP1P3-201ENST00000459980 809 ntBASIC14.88□□□□□ -0.03
RNF4P78317 AC004890.2-204ENST00000481968 304 ntBASIC14.88□□□□□ -0.03
RNF4P78317 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.88□□□□□ -0.03
RNF4P78317 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.88□□□□□ -0.03
RNF4P78317 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RNF4P78317 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RNF4P78317 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.88□□□□□ -0.03
RNF4P78317 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms