Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.83■□□□□ 0.28
HDAC4P56524 AC026150.2-201ENST00000564693 1156 ntBASIC16.83■□□□□ 0.28
HDAC4P56524 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.83■□□□□ 0.28
HDAC4P56524 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.83■□□□□ 0.28
HDAC4P56524 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.83■□□□□ 0.28
HDAC4P56524 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.83■□□□□ 0.28
HDAC4P56524 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.83■□□□□ 0.28
HDAC4P56524 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HDAC4P56524 AC134407.2-201ENST00000625089 1978 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
HDAC4P56524 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.82■□□□□ 0.28
HDAC4P56524 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.82■□□□□ 0.28
HDAC4P56524 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 SNHG9-202ENST00000564014 471 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 GPALPP1-207ENST00000611650 899 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 AL691403.2-201ENST00000618460 490 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 LINC00554-201ENST00000564841 3011 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HDAC4P56524 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 AL136982.4-201ENST00000437689 1740 ntBASIC16.82■□□□□ 0.28
HDAC4P56524 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
HDAC4P56524 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HDAC4P56524 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HDAC4P56524 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC4P56524 AP001282.1-201ENST00000531301 1499 ntBASIC16.81■□□□□ 0.28
HDAC4P56524 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 AL691432.1-201ENST00000596308 1422 ntBASIC16.81■□□□□ 0.28
HDAC4P56524 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 RPS8P6-201ENST00000426177 609 ntBASIC16.81■□□□□ 0.28
HDAC4P56524 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.81■□□□□ 0.28
HDAC4P56524 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.81■□□□□ 0.28
HDAC4P56524 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.81■□□□□ 0.28
HDAC4P56524 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.81■□□□□ 0.28
HDAC4P56524 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.81■□□□□ 0.28
HDAC4P56524 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDAC4P56524 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC4P56524 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.81■□□□□ 0.28
HDAC4P56524 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
HDAC4P56524 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.8■□□□□ 0.28
HDAC4P56524 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDAC4P56524 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms