Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SUMO3P55854 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SUMO3P55854 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.53□□□□□ -0.08
SUMO3P55854 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.53□□□□□ -0.08
SUMO3P55854 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SUMO3P55854 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.53□□□□□ -0.08
SUMO3P55854 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SUMO3P55854 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SUMO3P55854 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.52□□□□□ -0.09
SUMO3P55854 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
SUMO3P55854 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.52□□□□□ -0.09
SUMO3P55854 AL645939.2-201ENST00000427340 991 ntBASIC14.52□□□□□ -0.09
SUMO3P55854 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.52□□□□□ -0.09
SUMO3P55854 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.52□□□□□ -0.09
SUMO3P55854 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.52□□□□□ -0.09
SUMO3P55854 SPDYE12P-201ENST00000618416 771 ntBASIC14.52□□□□□ -0.09
SUMO3P55854 MIR6069-201ENST00000620069 79 ntBASIC14.52□□□□□ -0.09
SUMO3P55854 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.52□□□□□ -0.09
SUMO3P55854 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SUMO3P55854 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.52□□□□□ -0.09
SUMO3P55854 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.52□□□□□ -0.09
SUMO3P55854 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.52□□□□□ -0.09
SUMO3P55854 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SUMO3P55854 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SUMO3P55854 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SUMO3P55854 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms