Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 AP003171.2-201ENST00000528208 925 ntBASIC17.68■□□□□ 0.42
HTTP42858 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.68■□□□□ 0.42
HTTP42858 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.68■□□□□ 0.42
HTTP42858 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.68■□□□□ 0.42
HTTP42858 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HTTP42858 TUBBP5-203ENST00000508529 1334 ntBASIC17.68■□□□□ 0.42
HTTP42858 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.67■□□□□ 0.42
HTTP42858 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC17.67■□□□□ 0.42
HTTP42858 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HTTP42858 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 AL354989.2-201ENST00000435838 1540 ntBASIC17.67■□□□□ 0.42
HTTP42858 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 AL691432.1-201ENST00000596308 1422 ntBASIC17.67■□□□□ 0.42
HTTP42858 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.67■□□□□ 0.42
HTTP42858 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.67■□□□□ 0.42
HTTP42858 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
HTTP42858 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.67■□□□□ 0.42
HTTP42858 AL592424.1-201ENST00000563624 1536 ntBASIC17.67■□□□□ 0.42
HTTP42858 BX323043.1-201ENST00000641006 1765 ntBASIC17.67■□□□□ 0.42
HTTP42858 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HTTP42858 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 AL596276.2-201ENST00000447525 331 ntBASIC17.66■□□□□ 0.42
HTTP42858 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.66■□□□□ 0.42
HTTP42858 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.66■□□□□ 0.42
HTTP42858 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.66■□□□□ 0.42
HTTP42858 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HTTP42858 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HTTP42858 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
HTTP42858 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.66■□□□□ 0.42
HTTP42858 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HTTP42858 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HTTP42858 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HTTP42858 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HTTP42858 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.65■□□□□ 0.42
HTTP42858 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.65■□□□□ 0.42
HTTP42858 AC005357.2-202ENST00000590507 1060 ntBASIC17.65■□□□□ 0.42
HTTP42858 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HTTP42858 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HTTP42858 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HTTP42858 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HTTP42858 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
HTTP42858 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms