Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HNF4AP41235 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.66■□□□□ 0.1
HNF4AP41235 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.66■□□□□ 0.1
HNF4AP41235 MIR1233-2-201ENST00000408138 82 ntBASIC15.66■□□□□ 0.1
HNF4AP41235 MIR1233-1-201ENST00000408722 82 ntBASIC15.66■□□□□ 0.1
HNF4AP41235 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.66■□□□□ 0.1
HNF4AP41235 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.66■□□□□ 0.1
HNF4AP41235 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.66■□□□□ 0.1
HNF4AP41235 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.66■□□□□ 0.1
HNF4AP41235 IGHV3-62-201ENST00000520057 340 ntBASIC15.66■□□□□ 0.1
HNF4AP41235 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.66■□□□□ 0.1
HNF4AP41235 AC027307.2-201ENST00000591252 911 ntBASIC15.66■□□□□ 0.1
HNF4AP41235 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.66■□□□□ 0.1
HNF4AP41235 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HNF4AP41235 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HNF4AP41235 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 AP003680.1-201ENST00000598970 3660 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.65■□□□□ 0.1
HNF4AP41235 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.65■□□□□ 0.1
HNF4AP41235 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 UXT-AS1-201ENST00000590504 1525 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HNF4AP41235 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HNF4AP41235 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 SPCS2P4-201ENST00000436160 681 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 AL592309.1-201ENST00000443127 649 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
HNF4AP41235 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.65■□□□□ 0.1
HNF4AP41235 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.65■□□□□ 0.1
HNF4AP41235 AC024267.1-201ENST00000582320 895 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 AL596442.2-201ENST00000610240 980 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 SPTSSB-204ENST00000617024 1292 ntBASIC15.65■□□□□ 0.1
HNF4AP41235 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.65■□□□□ 0.1
HNF4AP41235 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.65■□□□□ 0.1
HNF4AP41235 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HNF4AP41235 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.64■□□□□ 0.1
HNF4AP41235 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
HNF4AP41235 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HNF4AP41235 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.64■□□□□ 0.09
HNF4AP41235 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HNF4AP41235 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HNF4AP41235 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms