Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC20.72■□□□□ 0.91
COL18A1P39060 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 HNRNPA1P32-201ENST00000396326 963 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC20.72■□□□□ 0.91
COL18A1P39060 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC20.72■□□□□ 0.91
COL18A1P39060 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 AC020914.3-201ENST00000594712 304 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 BX539320.1-201ENST00000623759 877 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 AC138627.1-207ENST00000641560 1006 ntBASIC20.72■□□□□ 0.91
COL18A1P39060 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.72■□□□□ 0.91
COL18A1P39060 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
COL18A1P39060 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL18A1P39060 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
COL18A1P39060 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
COL18A1P39060 AC079178.1-201ENST00000420915 656 ntBASIC20.71■□□□□ 0.91
COL18A1P39060 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC20.71■□□□□ 0.91
COL18A1P39060 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC20.71■□□□□ 0.91
COL18A1P39060 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC20.71■□□□□ 0.91
COL18A1P39060 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.71■□□□□ 0.91
COL18A1P39060 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC20.71■□□□□ 0.91
COL18A1P39060 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.71■□□□□ 0.91
COL18A1P39060 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.71■□□□□ 0.91
COL18A1P39060 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL18A1P39060 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL18A1P39060 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 CD8B2-202ENST00000417670 633 ntBASIC20.7■□□□□ 0.9
COL18A1P39060 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
COL18A1P39060 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL18A1P39060 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL18A1P39060 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
COL18A1P39060 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL18A1P39060 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.7■□□□□ 0.9
COL18A1P39060 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 POM121L10P-201ENST00000436994 1285 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 AC104982.3-201ENST00000581995 514 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.69■□□□□ 0.9
COL18A1P39060 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL18A1P39060 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.69■□□□□ 0.9
COL18A1P39060 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
COL18A1P39060 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 FLJ38576-201ENST00000623820 2459 ntBASIC20.69■□□□□ 0.9
COL18A1P39060 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL18A1P39060 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
COL18A1P39060 AC016700.1-201ENST00000429424 312 ntBASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms