Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.15■□□□□ 0.02
COL5A1P20908 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.15■□□□□ 0.02
COL5A1P20908 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 REXO1L1P-202ENST00000608646 1974 ntBASIC15.15■□□□□ 0.02
COL5A1P20908 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.15■□□□□ 0.02
COL5A1P20908 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 ACKR1-201ENST00000368121 1240 ntBASIC15.15■□□□□ 0.02
COL5A1P20908 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.15■□□□□ 0.02
COL5A1P20908 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.15■□□□□ 0.02
COL5A1P20908 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.15■□□□□ 0.02
COL5A1P20908 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 AL008638.5-201ENST00000623814 1298 ntBASIC15.15■□□□□ 0.02
COL5A1P20908 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL5A1P20908 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.14■□□□□ 0.01
COL5A1P20908 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.14■□□□□ 0.01
COL5A1P20908 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 AC104306.2-201ENST00000451877 341 ntBASIC15.14■□□□□ 0.01
COL5A1P20908 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.14■□□□□ 0.01
COL5A1P20908 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.14■□□□□ 0.01
COL5A1P20908 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.14■□□□□ 0.01
COL5A1P20908 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL5A1P20908 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL5A1P20908 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 AC134407.2-201ENST00000625089 1978 ntBASIC15.14■□□□□ 0.01
COL5A1P20908 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL5A1P20908 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.14■□□□□ 0.01
COL5A1P20908 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 AL607033.1-201ENST00000623900 1599 ntBASIC15.13■□□□□ 0.01
COL5A1P20908 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
COL5A1P20908 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
COL5A1P20908 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.13■□□□□ 0.01
COL5A1P20908 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 CNN2P10-201ENST00000443067 918 ntBASIC15.13■□□□□ 0.01
COL5A1P20908 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 AC138951.2-201ENST00000623455 1161 ntBASIC15.13■□□□□ 0.01
COL5A1P20908 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL5A1P20908 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL5A1P20908 AC006001.1-201ENST00000325130 474 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms