Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 MIR574-201ENST00000385209 96 ntBASIC15.74■□□□□ 0.11
PCNAP12004 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.74■□□□□ 0.11
PCNAP12004 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.74■□□□□ 0.11
PCNAP12004 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.74■□□□□ 0.11
PCNAP12004 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.74■□□□□ 0.11
PCNAP12004 AC040169.1-201ENST00000565382 521 ntBASIC15.74■□□□□ 0.11
PCNAP12004 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.74■□□□□ 0.11
PCNAP12004 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 AC091812.2-201ENST00000619081 385 ntBASIC15.74■□□□□ 0.11
PCNAP12004 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
PCNAP12004 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 AC073439.1-201ENST00000624121 1774 ntBASIC15.74■□□□□ 0.11
PCNAP12004 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.74■□□□□ 0.11
PCNAP12004 PRAL-201ENST00000624952 3286 ntBASIC15.74■□□□□ 0.11
PCNAP12004 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PCNAP12004 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PCNAP12004 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.73■□□□□ 0.11
PCNAP12004 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 MIR600HG-201ENST00000449175 5984 ntBASIC15.73■□□□□ 0.11
PCNAP12004 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 FAM58CP-201ENST00000435741 640 ntBASIC15.73■□□□□ 0.11
PCNAP12004 PRYP6-201ENST00000514804 343 ntBASIC15.73■□□□□ 0.11
PCNAP12004 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 AC002347.1-201ENST00000569543 541 ntBASIC15.73■□□□□ 0.11
PCNAP12004 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 AC099522.2-201ENST00000607001 744 ntBASIC15.73■□□□□ 0.11
PCNAP12004 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.73■□□□□ 0.11
PCNAP12004 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.73■□□□□ 0.11
PCNAP12004 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.73■□□□□ 0.11
PCNAP12004 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PCNAP12004 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCNAP12004 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms