Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM1P09493 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.8■□□□□ 0.44
TPM1P09493 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 HAUS4P1-201ENST00000406739 1145 ntBASIC17.8■□□□□ 0.44
TPM1P09493 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TPM1P09493 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.8■□□□□ 0.44
TPM1P09493 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.8■□□□□ 0.44
TPM1P09493 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 AC025062.2-201ENST00000605477 670 ntBASIC17.8■□□□□ 0.44
TPM1P09493 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 AC138969.2-201ENST00000532739 9932 ntBASIC17.8■□□□□ 0.44
TPM1P09493 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM1P09493 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM1P09493 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM1P09493 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM1P09493 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TPM1P09493 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TMBIM7P-203ENST00000641617 1718 ntBASIC17.79■□□□□ 0.44
TPM1P09493 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.79■□□□□ 0.44
TPM1P09493 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 AC136632.2-201ENST00000512891 861 ntBASIC17.79■□□□□ 0.44
TPM1P09493 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.79■□□□□ 0.44
TPM1P09493 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.79■□□□□ 0.44
TPM1P09493 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.79■□□□□ 0.44
TPM1P09493 MIR1199-201ENST00000621445 119 ntBASIC17.79■□□□□ 0.44
TPM1P09493 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.79■□□□□ 0.44
TPM1P09493 AC107918.4-202ENST00000641623 219 ntBASIC17.79■□□□□ 0.44
TPM1P09493 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.79■□□□□ 0.44
TPM1P09493 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 SSR4P1-203ENST00000599569 2260 ntBASIC17.79■□□□□ 0.44
TPM1P09493 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
TPM1P09493 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.79■□□□□ 0.44
TPM1P09493 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM1P09493 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
TPM1P09493 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 AC020658.6-201ENST00000623564 1870 ntBASIC17.78■□□□□ 0.44
TPM1P09493 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.78■□□□□ 0.44
TPM1P09493 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.78■□□□□ 0.44
TPM1P09493 KRT18P31-201ENST00000506277 1292 ntBASIC17.78■□□□□ 0.44
TPM1P09493 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TPM1P09493 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms