Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.57■□□□□ 0.08
HOXC4P09017 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
HOXC4P09017 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.57■□□□□ 0.08
HOXC4P09017 AL442647.2-201ENST00000429864 857 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.57■□□□□ 0.08
HOXC4P09017 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.57■□□□□ 0.08
HOXC4P09017 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.57■□□□□ 0.08
HOXC4P09017 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 WASH4P-201ENST00000564273 1246 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
HOXC4P09017 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 AC000095.1-201ENST00000603208 874 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 MIR8072-201ENST00000614241 80 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
HOXC4P09017 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 CYP2T1P-202ENST00000641596 2535 ntBASIC15.57■□□□□ 0.08
HOXC4P09017 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
HOXC4P09017 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HOXC4P09017 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.57■□□□□ 0.08
HOXC4P09017 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HOXC4P09017 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 KRT18P64-201ENST00000434946 1219 ntBASIC15.56■□□□□ 0.08
HOXC4P09017 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
HOXC4P09017 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
HOXC4P09017 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
HOXC4P09017 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.56■□□□□ 0.08
HOXC4P09017 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HOXC4P09017 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HOXC4P09017 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.55■□□□□ 0.08
HOXC4P09017 AC124067.4-201ENST00000519691 2379 ntBASIC15.55■□□□□ 0.08
HOXC4P09017 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HOXC4P09017 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HOXC4P09017 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.55■□□□□ 0.08
HOXC4P09017 CLK3P2-201ENST00000427566 1453 ntBASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms