Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.65■□□□□ 0.1
TNFP01375 AC123567.1-201ENST00000548294 1261 ntBASIC15.65■□□□□ 0.1
TNFP01375 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TNFP01375 RRP7BP-205ENST00000566851 833 ntBASIC15.65■□□□□ 0.1
TNFP01375 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.65■□□□□ 0.1
TNFP01375 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
TNFP01375 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TNFP01375 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TNFP01375 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TNFP01375 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
TNFP01375 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TNFP01375 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TNFP01375 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 GK-202ENST00000378941 458 ntTSL 3 BASIC15.64■□□□□ 0.09
TNFP01375 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TNFP01375 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 PHKG1P2-201ENST00000457537 863 ntBASIC15.64■□□□□ 0.09
TNFP01375 AC104596.2-201ENST00000512793 793 ntBASIC15.64■□□□□ 0.09
TNFP01375 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.64■□□□□ 0.09
TNFP01375 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.64■□□□□ 0.09
TNFP01375 RARRES2P5-201ENST00000564013 466 ntBASIC15.64■□□□□ 0.09
TNFP01375 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.64■□□□□ 0.09
TNFP01375 AC093726.1-201ENST00000608064 963 ntBASIC15.64■□□□□ 0.09
TNFP01375 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.64■□□□□ 0.09
TNFP01375 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TNFP01375 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
TNFP01375 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TNFP01375 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
TNFP01375 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TNFP01375 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.63■□□□□ 0.09
TNFP01375 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TNFP01375 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.63■□□□□ 0.09
TNFP01375 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.63■□□□□ 0.09
TNFP01375 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 LINC01115-203ENST00000606068 577 ntBASIC15.63■□□□□ 0.09
TNFP01375 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.63■□□□□ 0.09
TNFP01375 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.63■□□□□ 0.09
TNFP01375 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TNFP01375 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
TNFP01375 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms