Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 RARRES2P8-201ENST00000566335 367 ntBASIC15.75■□□□□ 0.11
SIX3O95343 AC106730.1-201ENST00000566722 1090 ntBASIC15.75■□□□□ 0.11
SIX3O95343 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.75■□□□□ 0.11
SIX3O95343 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.75■□□□□ 0.11
SIX3O95343 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
SIX3O95343 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
SIX3O95343 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
SIX3O95343 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SIX3O95343 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.74■□□□□ 0.11
SIX3O95343 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.74■□□□□ 0.11
SIX3O95343 AC020658.6-201ENST00000623564 1870 ntBASIC15.74■□□□□ 0.11
SIX3O95343 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 AC023824.1-201ENST00000562945 2975 ntBASIC15.74■□□□□ 0.11
SIX3O95343 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.74■□□□□ 0.11
SIX3O95343 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.74■□□□□ 0.11
SIX3O95343 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.74■□□□□ 0.11
SIX3O95343 AC092127.1-201ENST00000567093 3455 ntBASIC15.74■□□□□ 0.11
SIX3O95343 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SIX3O95343 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SIX3O95343 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.74■□□□□ 0.11
SIX3O95343 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.74■□□□□ 0.11
SIX3O95343 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.74■□□□□ 0.11
SIX3O95343 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.74■□□□□ 0.11
SIX3O95343 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.74■□□□□ 0.11
SIX3O95343 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 AC027601.4-201ENST00000611259 610 ntBASIC15.74■□□□□ 0.11
SIX3O95343 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.74■□□□□ 0.11
SIX3O95343 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.74■□□□□ 0.11
SIX3O95343 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SIX3O95343 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SIX3O95343 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.74■□□□□ 0.11
SIX3O95343 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.73■□□□□ 0.11
SIX3O95343 AC018892.3-201ENST00000623986 2499 ntBASIC15.73■□□□□ 0.11
SIX3O95343 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 AP001282.1-201ENST00000531301 1499 ntBASIC15.73■□□□□ 0.11
SIX3O95343 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.73■□□□□ 0.11
SIX3O95343 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.73■□□□□ 0.11
SIX3O95343 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.73■□□□□ 0.11
SIX3O95343 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SIX3O95343 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 AC073389.1-201ENST00000595595 795 ntBASIC15.73■□□□□ 0.11
SIX3O95343 AC091812.2-201ENST00000619081 385 ntBASIC15.73■□□□□ 0.11
SIX3O95343 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.73■□□□□ 0.11
SIX3O95343 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SIX3O95343 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SIX3O95343 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms