Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GGT4P-201ENST00000623672 1708 ntBASIC20.24■□□□□ 0.83
NPHP1O15259 AC005622.1-201ENST00000636801 1703 ntBASIC20.24■□□□□ 0.83
NPHP1O15259 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 PP12613-201ENST00000424958 2230 ntBASIC20.23■□□□□ 0.83
NPHP1O15259 REXO1L6P-201ENST00000603433 1515 ntBASIC20.23■□□□□ 0.83
NPHP1O15259 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 RARRES2P5-201ENST00000564013 466 ntBASIC20.23■□□□□ 0.83
NPHP1O15259 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC20.23■□□□□ 0.83
NPHP1O15259 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP1O15259 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 AC025048.3-201ENST00000590609 569 ntBASIC20.23■□□□□ 0.83
NPHP1O15259 AC005702.4-201ENST00000618393 416 ntBASIC20.23■□□□□ 0.83
NPHP1O15259 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NPHP1O15259 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NPHP1O15259 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.23■□□□□ 0.83
NPHP1O15259 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP1O15259 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP1O15259 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP1O15259 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP1O15259 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 SNX29P1-201ENST00000548357 1007 ntBASIC20.22■□□□□ 0.83
NPHP1O15259 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP1O15259 AL365330.1-201ENST00000607459 531 ntBASIC20.22■□□□□ 0.83
NPHP1O15259 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP1O15259 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP1O15259 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP1O15259 U82695.1-201ENST00000635752 1889 ntBASIC20.22■□□□□ 0.83
NPHP1O15259 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
NPHP1O15259 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.21■□□□□ 0.83
NPHP1O15259 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 CYP4F24P-201ENST00000586049 1580 ntBASIC20.21■□□□□ 0.83
NPHP1O15259 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
NPHP1O15259 FO393414.2-201ENST00000405153 598 ntBASIC20.21■□□□□ 0.83
NPHP1O15259 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP1O15259 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.21■□□□□ 0.83
NPHP1O15259 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP1O15259 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
NPHP1O15259 AC141586.5-201ENST00000624546 2050 ntBASIC20.21■□□□□ 0.83
NPHP1O15259 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP1O15259 AL136982.4-201ENST00000437689 1740 ntBASIC20.21■□□□□ 0.83
NPHP1O15259 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP1O15259 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
NPHP1O15259 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP1O15259 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.21■□□□□ 0.83
NPHP1O15259 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms