Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDHGA1Q9Y5H4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 LINC01144-201ENST00000626198 1710 ntBASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AC004987.2-201ENST00000395959 1148 ntBASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 GPR182-203ENST00000622922 591 ntBASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.41■□□□□ 0.06
PCDHGA1Q9Y5H4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PCGF3-213ENST00000620529 1899 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 BCYRN1-201ENST00000418539 200 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 RPL13P2-201ENST00000440687 659 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PFN1P12-201ENST00000455938 534 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AP000812.2-201ENST00000538934 718 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 LINC01115-203ENST00000606068 577 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 AL645728.1-201ENST00000366221 2101 ntBASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.4■□□□□ 0.06
PCDHGA1Q9Y5H4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms