Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FAM58CP-201ENST00000435741 640 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AP002472.1-201ENST00000577490 586 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AC091812.2-201ENST00000619081 385 ntBASIC13.06□□□□□ -0.32
FOXA2Q9Y261 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.06□□□□□ -0.32
FOXA2Q9Y261 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 KRT18P34-201ENST00000488218 1270 ntBASIC13.05□□□□□ -0.32
FOXA2Q9Y261 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
FOXA2Q9Y261 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC073347.1-201ENST00000421633 2643 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.04□□□□□ -0.32
FOXA2Q9Y261 AC011477.6-201ENST00000604980 1927 ntBASIC13.04□□□□□ -0.32
FOXA2Q9Y261 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms