Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS11Q9H270 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS11Q9H270 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS11Q9H270 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VPS11Q9H270 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS11Q9H270 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
VPS11Q9H270 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS11Q9H270 AF186996.4-201ENST00000467186 377 ntBASIC16.26■□□□□ 0.19
VPS11Q9H270 CXCL1P1-201ENST00000502804 216 ntBASIC16.26■□□□□ 0.19
VPS11Q9H270 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS11Q9H270 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
VPS11Q9H270 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS11Q9H270 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS11Q9H270 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS11Q9H270 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS11Q9H270 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VPS11Q9H270 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VPS11Q9H270 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 AL513480.1-201ENST00000451731 511 ntBASIC16.25■□□□□ 0.19
VPS11Q9H270 AC018712.1-201ENST00000455767 687 ntBASIC16.25■□□□□ 0.19
VPS11Q9H270 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 MIR4751-201ENST00000578027 74 ntBASIC16.25■□□□□ 0.19
VPS11Q9H270 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.25■□□□□ 0.19
VPS11Q9H270 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS11Q9H270 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.25■□□□□ 0.19
VPS11Q9H270 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VPS11Q9H270 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS11Q9H270 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 RPS2P28-201ENST00000314255 741 ntBASIC16.24■□□□□ 0.19
VPS11Q9H270 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.24■□□□□ 0.19
VPS11Q9H270 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 EMBP1-201ENST00000458200 901 ntBASIC16.24■□□□□ 0.19
VPS11Q9H270 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS11Q9H270 AC117500.6-201ENST00000624871 588 ntBASIC16.24■□□□□ 0.19
VPS11Q9H270 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS11Q9H270 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS11Q9H270 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VPS11Q9H270 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms