Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.42■□□□□ 0.38
CCDC42Q96M95 AC108751.1-201ENST00000490852 363 ntBASIC17.42■□□□□ 0.38
CCDC42Q96M95 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 AL121912.1-201ENST00000603683 238 ntBASIC17.42■□□□□ 0.38
CCDC42Q96M95 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 AC109635.5-201ENST00000533593 962 ntBASIC17.41■□□□□ 0.38
CCDC42Q96M95 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 AL109954.1-202ENST00000564051 2148 ntBASIC17.41■□□□□ 0.38
CCDC42Q96M95 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC42Q96M95 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC42Q96M95 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 VN2R19P-201ENST00000442399 1052 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 EMBP1-201ENST00000458200 901 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 AC092910.1-201ENST00000482027 1129 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 AL009183.1-201ENST00000603760 355 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 AC148477.8-201ENST00000624298 468 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 FAM215A-202ENST00000632077 792 ntBASIC17.4■□□□□ 0.38
CCDC42Q96M95 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.4■□□□□ 0.38
CCDC42Q96M95 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC42Q96M95 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms